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Edit: shameless plug. Maybe a little shame related to how often I (need to) use the thing I made.
Some friends and I kept having this same issue coming from long day at work or - more likely - the bar. We're in Chicago and made Commuterific for Chicago-based Transit.
https://play.google.com/store/apps/details?id=com.commuterific.android
No frills or fanciness. Just a straight up solution for our stop-missing and nap-supporting problem.