Flow doesn't do routing, its a distributed firewall.
So if OP wanted to segregate it with separate VLAN and virtual firewall (Aka, NSX Edge Gateway), Flow wouldn't do that. If OP wanted to use Flow to segregate out these VMs from others on the same VLAN, Flow would work. The cost for Flow is rather... pricey though. I have heard that Nutanix is working on something akin to a NSX Edge Gateway, but its a few releases away at best.
/u/LBEB80 You could try something like a https://www.pfsense.org/ firewall. I have not tried it myself, but in theory it should work.
it may look rude, but actually, there are so many variables, in this case, that is hard to tell or predict something. Lot of small details of course, but if you treat company=department with some limitation it's possible. VLANs, virtual router per client(i recommend VyOS) Some active directory magic too. But this all not out of the box, and kind of "do the needful" in wide scope
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I use these with a NX-1165-G6 block and netgear M4300-24X24F switches.